This documentation is for development version 0.18.dev0.

mne.bem.make_watershed_bem

mne.bem.make_watershed_bem(subject, subjects_dir=None, overwrite=False, volume='T1', atlas=False, gcaatlas=False, preflood=None, show=False, verbose=None)[source]

Create BEM surfaces using the FreeSurfer watershed algorithm.

Parameters:
subject : str

Subject name (required)

subjects_dir : str

Directory containing subjects data. If None use the Freesurfer SUBJECTS_DIR environment variable.

overwrite : bool

Write over existing files

volume : str

Defaults to T1

atlas : bool

Specify the –atlas option for mri_watershed

gcaatlas : bool

Use the subcortical atlas

preflood : int

Change the preflood height

show : bool

Show surfaces to visually inspect all three BEM surfaces (recommended).

New in version 0.12.

verbose : bool, str, int, or None

If not None, override default verbose level (see mne.verbose() and Logging documentation for more).

Notes

New in version 0.10.

Examples using mne.bem.make_watershed_bem