Robust Multimodal Imaging; Talk to be presented at ISMRM Workshop on White Matter, Analysis, Translation, Experimental Validation, Evaluation & Reproducibility, 2023
High-definition MRI: tailored encoding and reconstruction across scales and field strengths; Talk presentated at the Center for Biomedical Imaging, EPFL, 2023
Efficient MRI through Optimized Encoding and Reconstruction; Talk presentated at the Weill Cornell Medical College, 2022
Efficient MRI through improved encoding & reconstruction; Talk presented at the Brain Research Society, Turkey, 2022
Value of Multicontrast Techniques (Neuro); Educational presentation at ISMRM, 2022
Efficient MRI through Improved Encoding and Reconstruction; Talk presented at Department of Electrical and Electronics Engineering, Bogazici University, 2021
Efficient MRI through Improved Encoding and Reconstruction; Talk presented at King’s College London, 2021
Efficient EPI through Improved Encoding and Reconstruction; Talk presented at Donders Institute, Radboud University, 2021
Efficient MRI through Improved Encoding and Reconstruction; Talk presented at Department of Bioengineering, UIUC, 2021
Efficient MRI through Improved Encoding and Reconstruction; Talk presented at UMRAM, Bilkent University, Turkey, 2021
Efficient MRI through Improved Encoding and Reconstruction; Talk presented at Fetal Neonatal Neuroimaging and Developmental Science Center, Boston Children’s Hospital, 2020
Efficient MRI through Improved Encoding and Reconstruction; Talk presented at Radiological Sciences Laboratory, Stanford University, 2020
Highly Efficient MRI Through Multi-shot Echo Planar Imaging; Talk presented at the SPIE Wavelets and Sparsity XVIII conference, 2019
Wave Encoding: The Sequence, the Reconstruction & the Trade-Offs; Talk presented at ISMRM Weekend Educational Session, 2019
QSM Tools & Their Biases; Talk presented at ISMRM Weekend Educational Session, 2019
Basic Physics of Multiband Imaging; Talk presented at ISMRM Weekend Educational Session, 2018
Faster MRI through Optimized Encoding and Reconstruction; Talk presented at the Memorial Sloan Kettering Cancer Center, 2018
Faster MRI through Optimized Encoding and Reconstruction; Talk presented at CAI2R, New York University, 2018
Faster MRI through Optimized Encoding and Reconstruction; Talk presented at Department of Radiology, Cornell University, 2017
Faster MRI through Optimized Encoding and Reconstruction; Talk presented at Imaging Elevated Symposium, University of Utah, 2017 [PDF]
Susceptibility Weighted Imaging and Quantitative Susceptibility Mapping; Talk presented at Neuroradiology Divison, Massachusetts General Hospital, 2016 [PDF]
Accelerated QSM; Talk presented at Fourth International Workshop on MRI Phase Contrast & Quantitative Susceptibility Mapping, 2016 [PDF]
Advanced Parallel Imaging for Beyond Order of Magnitude Accelerated Neuroimaging; Talk presented at the Barrow Neurological Institute, Keller Center for Imaging Innovation, 2015 [PDF]
Wave-CAIPI for Efficient TSE and QSM Acquisitions with Application in Brain Tumors; Talk presented at ISMRM Workshop on Simultaneous Multi-Slice Imaging, 2015 [PDF]
Sparse Methods for Quantitative Susceptibility Mapping; Talk presented at the SPIE Wavelets and Sparsity XIV conference, 2015
Simultaneous Multi-Slice Acquisition for Rapid Neuroimaging; Talk presented at OHBM 2015 Morning Workshop: Neuroimaging Applications of Simultaneous Multi-Slice Imaging [PDF]
Susceptibility Weighted Data Acquisition and Processing; Talk presented at MICCAI 2014 Workshop on Intelligent Imaging [PDF]
Highly Accelerated 3D Imaging; Talk presented at 3rd Magnetic Resonance Balkan Outreach Program 2014 [PDF]
Wave-CAIPI: Highly Accelerated 3D Imaging with Reduced g-factor Penalty; Talk presented at Boston Children's Hospital, 2014 [PDF]
S. Demir, B. Clifford, W.C. Lo, A. Tabari, A.L.M. Goncalves Filho, M. Lang, S.F. Cauley, K. Setsompop, B. Bilgic, M.H. Lev, P.W. Schaefer, O. Rapalino, S.Y. Huang, T. Hilbert, T. Feiweier, J. Conklin;
Optimization of magnetization transfer contrast for EPI FLAIR brain imaging;
Magnetic Resonance in Medicine
B. Clifford, J. Conklin, S.Y. Huang, T. Feiweier, Z. Hosseini, A.L.M. Goncalves Filho, A. Tabari, S. Demir, W.C. Lo, M.G.F. Longo, M. Lev, P. Schaefer, O. Rapalino, K. Setsompop, B. Bilgic, S. Cauley;
An artificial intelligence-accelerated 2-minute multi-shot echo planar imaging protocol for comprehensive high-quality clinical brain imaging;
Magnetic Resonance in Medicine
Z. Li, Q. Tian, C. Ngamsombat, S. Cartmell, J. Conklin, A.L.M.G Filho, W.C. Lo, G. Wang, K. Ying, K. Setsompop, Q. Fan, B. Bilgic, S. Cauley, S.Y. Huang;
High-fidelity fast volumetric brain MRI using synergistic wave-controlled aliasing in parallel imaging and a hybrid denoising generative adversarial network (HDnGAN);
Medical Physics
Y. Arefeen, O.Beker, J. Cho, H. Yu, E. Adalsteinsson, B. Bilgic;
Scan-specific artifact reduction in k-space (SPARK) neural networks synergize with physics-based reconstruction to accelerate MRI;
Magnetic Resonance in Medicine
[preprint][Python code]
R. Jones, C. Maffei, J. Augustinack, B. Fischl, H. Wang, B. Bilgic, A. Yendiki;
High-fidelity approximation of grid- and shell-based sampling schemes from undersampled DSI using compressed sensing: Post mortem validation;
Neuroimage
F.F. Yu, S.Y. Huang, A. Kumar, T. Witzel, C. Liao, T. Duval, J. Cohen-Adad, B. Bilgic;
Rapid simultaneous acquisition of macromolecular tissue volume, susceptibility, and relaxometry maps;
Magnetic Resonance in Medicine
S.Y. Huang, T. Witzel, B. Keil, A. Scholz, M. Davids, P. Dietz, E. Rummert, R. Ramb, J.E. Kirsch, A. Yendiki, Q. Fan, Q. Tian, G. Ramos-Llordén, H.H. Lee, A. Nummenmaa, B. Bilgic, K. Setsompop, F. Wang, A.V. Avram, M. Komlosh, D. Benjamini, K.N. Magdoom, S. Pathak, W. Schneider, D.S. Novikov, E. Fieremans, S. Tounekti, C. Mekkaoui, J. Augustinack, D. Berger, A. Shapson-Coe, J. Lichtman, P.J. Basser, L.L. Wald, B.R. Rosen;
Connectome 2.0: Developing the next-generation ultra-high gradient strength human MRI scanner for bridging studies of the micro-, meso- and macro-connectome;
Neuroimage
A. Scholz, R. Etzel, M.W. May, M. Mahmutovic, Q. Tian, G. Ramos-Llordén, C. Maffei, B. Bilgic, T. Witzel, J.P. Stockmann, C. Mekkaoui, L.L. Wald, S.Y. Huang, A. Yendiki, B. Keil;
A 48-channel receive array coil for mesoscopic diffusion-weighted MRI of ex vivo human brain on the 3 T connectome scanner;
Neuroimage
QSM Challenge 2.0 Organization Committee, B. Bilgic, C. Langkammer, J.P. Marques, J. Meineke, C. Milovic, F. Schweser;
QSM reconstruction challenge 2.0: Design and report of results;
Magnetic Resonance in Medicine
[PDF][Matlab code]
M.K. Manhard, J.P. Stockmann, C. Liao, D. Park, S. Han, M. Fair, M. van den Boomen, J.R. Polimeni, B. Bilgic, K. Setsompop;
A multi-inversion multi-echo spin and gradient echo echo planar imaging sequence with low image distortion for rapid quantitative parameter mapping and synthetic image contrasts;
Magnetic Resonance in Medicine
C. Liao, B. Bilgic, Q. Tian, J.P. Stockmann, X. Cao, Q. Fan, S.S Iyer, F. Wang, C. Ngamsombat, W.C. Lo, M.K. Manhard, S.Y. Huang, L.L. Wald, K. Setsompop;
Distortion-free, high-isotropic-resolution diffusion MRI with gSlider BUDA-EPI and multicoil dynamic B0 shimming;
Magnetic Resonance in Medicine
Q. Tian, N. Zaretskaya, Q. Fan, C. Ngamsombat, B. Bilgic, J.R. Polimeni, S.Y. Huang;
Improved cortical surface reconstruction using sub-millimeter resolution MPRAGE by image denoising;
Neuroimage
J.P. Marques, J. Meineke, C. Milovic, B. Bilgic, K.S. Chan, R. Hedouin, W. van der Zwaag, C. Langkammer, F. Schweser;
QSM reconstruction challenge 2.0: A realistic in silico head phantom for MRI data simulation and evaluation of susceptibility mapping procedures;
Magnetic Resonance in Medicine
Z. Dong, F. Wang, K.S. Chan, T.G. Reese, B. Bilgic, J.P. Marques, K. Setsompop;
Variable flip angle echo planar time-resolved imaging (vFA-EPTI) for fast high-resolution gradient echo myelin water imaging;
Neuroimage
Q. Tian, B. Bilgic, Q. Fan, C. Ngamsombat, N. Zaretskaya, N.E. Fultz, N.A. Ohringer, A.S. Chaudhari, Y. Hu, T. Witzel, K. Setsompop, J.R. Polimeni, S.Y. Huang;
Improving in vivo human cerebral cortical surface reconstruction using data-driven super-resolution;
Cerebral Cortex
C. Milovic, C. Prieto, B. Bilgic, S. Uribe, J. Acosta-Cabronero, P. Irarrazaval, C. Tejos;
Comparison of parameter optimization methods for quantitative susceptibility mapping;
Magnetic Resonance in Medicine
Q. Tian, B. Bilgic, Q. Fan, C. Liao, C. Ngamsombat, Y. Hu, T. Witzel, K. Setsompop, J.R. Polimeni, S.Y. Huang;
DeepDTI: High-fidelity six-direction diffusion tensor imaging using deep learning;
Neuroimage
D. Polak, I. Chatnuntawech, J. Yoon, S.S. Iyer, J. Lee, P. Bachert, E. Adalsteinsson, K. Setsompop, B. Bilgic;
Nonlinear dipole inversion (NDI) enables robust quantitative susceptibility mapping (QSM);
NMR in Biomedicine [preprint][Matlab code]
X. Cao, C. Liao, Z. Zhang, S.S. Iyer, K. Wang, H. He, H. Liu, K. Setsompop, J. Zhong, B. Bilgic;
Efficient T2 mapping with blip-up/down EPI and gSlider-SMS (T2-BUDA-gSlider);
Magnetic Resonance in Medicine
[preprint][Matlab code]
D. Polak, S. Cauley, B. Bilgic, E. Gong, P. Bachert, E. Adalsteinsson, K. Setsompop;
Joint multi-contrast Variational Network reconstruction (jVN) with application to rapid 2D and 3D imaging;
Magnetic Resonance in Medicine
Z. Dong, F. Wang, T.G. Reese, B. Bilgic, K. Setsompop;
Echo Planar Time-Resolved Imaging (EPTI) with Subspace Reconstruction and Optimized Spatiotemporal Encoding;
Magnetic Resonance in Medicine
C. Milovic, C. Tejos, J. Acosta-Cabronero, P.S. Özbay, F. Schwesser, J.P. Marques, P. Irarrazaval, B. Bilgic, C. Langkammer;
The 2016 QSM Challenge: Lessons learned and considerations for a future challenge design; Magnetic Resonance in Medicine
S. Han, C. Liao, M.K. Manhard, D.J. Park, B. Bilgic, M.J. Fair, F. Wang, A.I. Blazejewska, W.A. Grissom, J.R. Polimeni, K. Setsompop;
Accelerated spin-echo functional MRI using multisection excitation by simultaneous spin-echo interleaving (MESSI) with complex-encoded generalized slice dithered enhanced resolution (cgSlider) simultaneous multislice echo-planar imaging; Magnetic Resonance in Medicine
C. Liao, J. Stockmann, Q. Tian, B. Bilgic, N.S. Arango, M.K. Manhard, S.Y. Huang, W.A. Grissom, L.L. Wald, K. Setsompop;
High-fidelity, high-isotropic-resolution diffusion imaging through gSlider acquisition with B1+ and T1 corrections and integrated ΔB0 /Rx shim array; Magnetic Resonance in Medicine
M.W. Haskell, S.F. Cauley, B. Bilgic, J. Hossbach, D.N. Splitthoff, J. Pfeuffer, K. Setsompop, L.L. Wald;
Network Accelerated Motion Estimation and Reduction (NAMER): Convolutional neural network guided retrospective motion correction using a separable motion model; Magnetic Resonance in Medicine
M.K. Manhard, B. Bilgic, C. Liao, S.H. Han, T. Witzel, Y.F. Yen, K. Setsompop;
Accelerated whole brain perfusion imaging using a simultaneous multi-slice (SMS) spin and gradient echo (SAGE) sequence with joint-virtual coil (JVC) reconstruction; Magnetic Resonance in Medicine
B. Bilgic, I. Chatnuntawech, M.K. Manhard, Q. Tian, C. Liao, S.F. Cauley, S.Y. Huang, J.R. Polimeni, L.L. Wald, K. Setsompop;
Highly Accelerated Multishot EPI through Synergistic Machine Learning and Joint Reconstruction; Magnetic Resonance in Medicine
[preprint][Matlab code]
I. Chatnuntawech, K. Tantisantisom, P. Khanchaitit, T. Boonkoom, B. Bilgic, E. Chuangsuwanich;
Rice Classification Using Spatio-Spectral Deep Convolutional Neural Network; arXiv preprint arXiv:1805.11491
C. Liao, M.K. Manhard, B. Bilgic, an, Q. Fan, S. Han, F. Wang, D.J. Park, T. Witzel, J. Zhong, H. Wang, L.L. Wald, K. Setsompop;
Phase-matched virtual coil reconstruction for highly accelerated diffusion echo-planar imaging; Neuroimage
D. Polak, S.F. Cauley, S.Y. Huang, M.G. Longo, J. Conklin, B. Bilgic, N. Ohringer, E. Raithel, P. Bachert, L.L. Wald, K. Setsompop;
Highly-accelerated volumetric brain examination using optimized wave-CAIPI encoding; Journal of Magnetic Resonance Imaging
F. Wang, Z. Dong, T.G. Reese, B. Bilgic, M.K. Manhard, J. Chen, J.R. Polimeni, L.L. Wald, K. Setsompop;
Echo planar time-resolved imaging (EPTI); Magnetic Resonance in Medicine
T.H. Kim, B. Bilgic, D. Polak, K. Setsompop, J.P. Haldar;
Wave-LORAKS: Combining Wave Encoding with Structured Low-Rank Matrix Modeling for More Highly Accelerated 3D Imaging; Magnetic Resonance in Medicine
J. Yoon#, E. Gong#, I. Chatnuntawech, B. Bilgic, J. Lee, W. Jung, J. Ko, H. Jung, K. Setsompop, G. Zaharchuk, E.Y. Kim, J. Pauly, J. Lee;
Quantitative Susceptibility Mapping using Deep Neural Network: QSMnet; NeuroImage
# Equal contribution
G.C. Ngo, B. Bilgic, B.A. Gagoski, B.P. Sutton;
Correction of Magnetic Field Inhomogeneity Effects for Fast Quantitative Susceptibility Mapping; Magnetic Resonance in Medicine
C. Milovic, B. Bilgic, B. Zhao, C. Langkammer, C. Tejos, J. Acosta-Cabronero;
Weak-harmonic regularization for quantitative susceptibility mapping (WH-QSM); Magnetic Resonance in Medicine
Z. Dong, F. Wang, T.G. Reese, M.K. Manhard, B. Bilgic, L.L. Wald, H. Guo, K. Setsompop;
Tilted-CAIPI for Highly Accelerated Distortion-Free EPI with Point Spread Function (PSF) Encoding; Magnetic Resonance in Medicine
F.F. Yu, F. Chiang, N. Stephens, B. Tantiwongkosi, B. Bilgic , S.Y. Huang, R. Romero;
Characterization of normal-appearing white matter in multiple sclerosis using quantitative susceptibility mapping in conjunction with diffusion tensor imaging; Neuroradiology
F. Wang, B. Bilgic, Z. Dong, M.K. Manhard, N. Ohringer, B. Zhao, M. Haskell, S.F. Cauley, Q. Fan, T. Witzel, E. Adalsteinsson, L.L. Wald, K. Setsompop;
Motion-robust sub-millimeter isotropic diffusion imaging through motion corrected generalized slice dithered enhanced resolution (MC-gSlider) acquisition; Magnetic Resonance in Medicine
Z. Wu#, B. Bilgic#, H. He, Y. Sun, Y. Du, K. Setsompop, J. Zhong; Wave-CAIPI ViSTa: Highly Accelerated Whole-Brain Direct Myelin Water Imaging with Zero-Padding Reconstruction; Magnetic Resonance in Medicine
# Equal contribution
B. Bilgic#, T.H. Kim#, C. Liao, M.K. Manhard, L.L. Wald, J. Haldar, K. Setsompop; Improving Parallel Imaging by Jointly Reconstructing Multi-Contrast Data; Magnetic Resonance in Medicine
[PDF][Matlab code] # Equal contribution
C. Milovic, B. Bilgic, B. Zhao, J. Acosta-Cabronero, C. Tejos; Fast Nonlinear Susceptibility Inversion with Variational Regularization; Magnetic Resonance in Medicine
[Matlab code]
C. Liao#, B. Bilgic#, M.K. Manhard, B. Zhao, X. Cao, J. Zhong, L.L. Wald, K. Setsompop; 3D MR fingerprinting with accelerated stack-of-spirals and hybrid sliding-window and GRAPPA reconstruction; NeuroImage
[PDF] # Equal contribution
C. Langkammer#, F. Schweser#, K. Shmueli#, C. Kames, X. Li, L. Guo, C. Milovic, J. Kim, H. Wei, K. Bredies, S. Buch, Y. Guo, Z. Liu, J. Meineke, A. Rauscher, J.P. Marques, B. Bilgic>#; Quantitative Susceptibility Mapping: Report from the 2016 Reconstruction Challenge; Magnetic Resonance in Medicine
[PDF] # Equal contribution
B. Bilgic#, H. Ye#, L.L. Wald, K. Setsompop; Simultaneous Time Interleaved MultiSlice (STIMS) for Rapid Susceptibility Weighted Acquisition; NeuroImage
[PDF][Matlab code] # Equal contribution
S. Soman, J.A. Bregni, B. Bilgic, U. Nemec, A.P. Fan, Z. Liu, R.L. Barry, J. Du, M. Moseley, Y. Wang; Susceptibility Based Neuroimaging: Standard Methods, Clinical Applications and Future Directions; Current Radiology Reports, review article
K. Setsompop, Q. Fan, B. Bilgic, J. Stockmann, S. Huang, S.F. Cauley, A. Nummenmaa, Y. Rathi, T. Witzel, L.L. Wald; High-resolution In Vivo Diffusion Imaging of the Human Brain with Generalized SLIce Dithered Enhanced Resolution Simultaneous MultiSlice (gSlider-SMS); Magnetic Resonance in Medicine
D. Polak, K. Setsompop, S.F. Cauley, B.A. Gagoski, F. Maier, P. Bachert, L.L. Wald, B. Bilgic; Wave-CAIPI for Highly Accelerated MP-RAGE Imaging; Magnetic Resonance in Medicine
[PDF]
U. Yarach, M.H. In, I. Chatnuntawech, B. Bilgic, F. Godenschweger, H. Mattern, A. Sciarra, O. Speck; Model-based Iterative Reconstruction for Single-shot EPI at 7T; Magnetic Resonance in Medicine
S.F. Cauley, K. Setsompop, B. Bilgic, H. Bhat, B.A. Gagoski, L.L. Wald; Auto-calibrated Wave-CAIPI Reconstruction; Joint Optimization of K-space Trajectory and Parallel Imaging Reconstruction; Magnetic Resonance in Medicine
H. Ye, S.F. Cauley, B.A. Gagoski, B. Bilgic, D. Ma, Y. Jiang, Y. Du, M.A. Griswold, L.L. Wald, K. Setsompop; Simultaneous Multi-Slice Magnetic Resonance Fingerprinting (SMS-MRF) with Direct-spiral Slice- GRAPPA (ds-SG) Reconstruction; Magnetic Resonance in Medicine
I. Chatnuntawech, P. McDaniel, S.F. Cauley, B.A. Gagoski, C. Langkammer, A. Martin, P.E. Grant, L.L. Wald, K. Setsompop, E. Adalsteinsson, B. Bilgic; TGV-Regularized Single-Step Quantitative Susceptibility Mapping; NMR in Biomedicine
[PDF][Matlab code]
P. McDaniel, B. Bilgic, A.P. Fan, J. Stout, E. Adalsteinsson; Mitigation of Partial-Volume Effects in Susceptibility-Based Oxygenation Measurements by Joint Utilization of Magnitude and Phase (JUMP); Magnetic Resonance in Medicine
I. Chatnuntawech#, A. Martin#, B. Bilgic, K. Setsompop, E. Adalsteinsson, E. Schiavi; Vectorial Total Generalized Variation for Accelerated Multi-Channel Multi-Contrast MRI; Magnetic Resonance Imaging
# Equal contribution
B. Bilgic, L. Xie, R. Dibb, C. Langkammer, A. Mutluay, H. Ye, J.R. Polimeni, C. Liu, L.L. Wald, K. Setsompop; Rapid Multi-Orientation Quantitative Susceptibility Mapping; NeuroImage [PDF][Matlab code]
C. Langkammer, K. Bredies, B.A. Poser, M. Barth, G. Reishofer, A.P. Fan, B. Bilgic, F. Fazekas, C. Mainero, S. Ropele; Fast Quantitative Susceptibility Mapping using 3D EPI and Total Generalized Variation; NeuroImage
B. Gagoski#, B. Bilgic#, C. Eichner, H. Bhat, P.E. Grant, L.L. Wald, K. Setsompop; RARE/Turbo Spin Echo Imaging with Simultaneous MultiSlice Wave-CAIPI; Magnetic Resonance in Medicine
[PDF][Matlab code] # Equal contribution
B. Bilgic, B. Gagoski, S.F. Cauley, A.P. Fan, J.R. Polimeni, P.E. Grant, L.L. Wald, K. Setsompop; Wave-CAIPI for Highly Accelerated 3D Imaging; Magnetic Resonance in Medicine
[PDF][Matlab code] Editor's pick June 2015
I. Chatnuntawech, B. Gagoski, B. Bilgic, S.F. Cauley, K. Setsompop, E. Adalsteinsson; Accelerated MRSI Using Randomly Undersampled Spiral-Based k-Space Trajectories; Magnetic Resonance in Medicine
S.F. Cauley, Y. Xi, B. Bilgic, J. Xia, E. Adalsteinsson, V. Balakrishnan, L.L. Wald, K. Setsompop; Fast reconstruction for multichannel compressed sensing using a hierarchically semiseparable solver; Magnetic Resonance in Medicine
B. Bilgic, A.P. Fan, J.R. Polimeni, S.F. Cauley, M. Bianciardi, E. Adalsteinsson, L.L. Wald, K. Setsompop; Fast Quantitative Susceptibility Mapping with L1-Regularization and Automatic Parameter Selection; Magnetic Resonance in Medicine
[PDF][Matlab code]
A.P. Fan, B. Bilgic, L. Gagnon, T. Witzel, H. Bhat, B.R. Rosen, E. Adalsteinsson; Quantitative Oxygenation Venography from MRI Phase; Magnetic Resonance in Medicine
B. Bilgic, I. Chatnuntawech, A.P. Fan, K. Setsompop, S.F. Cauley, L.L. Wald, E. Adalsteinsson; Fast Image Reconstruction with L2-Regularization; Journal of Magnetic Resonance Imaging [PDF][Matlab code]
B. Bilgic, I. Chatnuntawech, K. Setsompop, S.F. Cauley, L.L. Wald, E. Adalsteinsson; Fast Diffusion Spectrum Imaging Reconstruction with Trained Dictionaries; IEEE Transactions on Medical Imaging, [PDF][Revised Matlab code]
B. Bilgic, K. Setsompop, J. Cohen-Adad, A. Yendiki, L.L. Wald, E. Adalsteinsson; Accelerated Diffusion Spectrum Imaging with Compressed Sensing using Adaptive Dictionaries; Magnetic Resonance in Medicine, [PDF][Matlab code] Cover article December 2012
B. Bilgic, B. Gagoski, T. Kok, E. Adalsteinsson; Lipid Suppression in CSI with Spatial Priors and Highly Undersampled Peripheral k-space; Magnetic Resonance in Medicine, [PDF][Matlab code]
B. Bilgic, A. Pfefferbaum, T. Rohlfing, E.V. Sullivan, E. Adalsteinsson; MRI Estimates of Brain Iron Concentration in Normal Aging Using Quantitative Susceptibility Mapping; NeuroImage, [PDF][Matlab code]
Z. Zhang, H. Ye, M. Li, H. Liu, B. Bilgic; Liver-BUDA-SAGE: Simultaneous whole liver T2 and T2* mapping in one breath-hold; International Symposium on Biomedical Imaging: Kolkata, India, 2022
C Liao, X Cao, J Cho, Z Zhang, K Setsompop, B. Bilgic; Highly efficient MRI through multi-shot echo planar imaging; Wavelets and Sparsity XVIII, SPIE 2019
[PDF]
B. Zhao, B. Bilgic, E. Adalsteinsson, M.A. Griswold, L.L. Wald, K. Setsompop; Simultaneous multislice magnetic resonance fingerprinting with low-rank and subspace modeling; EMBC 2017
S. Cetin, B. Bilgic, A.P. Fan, S.J. Holdsworth, G. Unal; Vessel Orientation Constrained Quantitative Susceptibility Mapping (QSM) Reconstruction; MICCAI 2016
B. Bilgic, I. Chatnuntawech, C. Langkammer, K. Setsompop; Sparse Methods for Quantitative Susceptibility Mapping; Wavelets and Sparsity XIV, SPIE 2015
[PDF][Matlab code]
I. Chatnuntawech, B. Bilgic, A. Martin, K. Setsompop, E. Adalsteinsson; Fast Reconstruction for Accelerated Multi-Slice Multi-Contrast MRI; International Symposium on Biomedical Imaging: From Nano to Macro, 2015
B. Zhao, F. Lam, B. Bilgic, H. Ye, K. Setsompop; Maximum Likelihood Reconstruction for Magnetic Resonance Fingerprinting; International Symposium on Biomedical Imaging: From Nano to Macro, 2015
F. Yanez, A.P. Fan, B. Bilgic, C. Milovic, E. Adalsteinsson, P. Irarrazaval; Quantitative Susceptibility Map Reconstruction via Total Generalized Variation Regularization; 3rd International Workshop on Pattern Recognition in NeuroImaging
B. Bilgic, K. Setsompop, J. Cohen-Adad, V. Wedeen, L. Wald, E. Adalsteinsson; Accelerated Diffusion Spectrum Imaging with Compressed Sensing using Adaptive Dictionaries; MICCAI 2012,
[PDF][Matlab code] MICCAI Young Scientist Award Finalist
B. Bilgic, B.K.P. Horn, I. Masaki; Fast Human Detection with Cascaded Ensembles on the GPU; IEEE Intelligent Vehicles Symposium, 2010, Pages: 325 - 332 [PDF]
B. Bilgic, B.K.P. Horn, I. Masaki; Efficient Integral Image Computation on the GPU ; IEEE Intelligent Vehicles Symposium, 2010, Pages: 528 - 533 [PDF]
Conference Abstracts:
2020:
W-C Lo, B. Clifford, S. Bollmann, T. Feiweier, S. Giri, C. Liao, J. Cho, S. Cauley, K. Setsompop, B. Bilgic; 2-minute Comprehensive Brain Exam Using Multi-Shot EPI with Synergistic Model-Based & Deep Learning Reconstruction; ISMRM Workshop on MData Sampling & Image Reconstruction, Sedona, AZ, USA, 2020
W. Lee, S. So, J. Cho, C. Liao, Q. Tian, H. Park, E. Adalsteinsson, K. Setsompop, B. Bilgic; Rapid Distortion Free Diffusion Imaging Using Joint k/q-Space Reconstruction & Tailored Acquisition; ISMRM Workshop on MData Sampling & Image Reconstruction, Sedona, AZ, USA, 2020
Q. Tian, B. Bilgic, Q. Fan, C. Liao, C. Ngamsombat, Y. Hu, T. Witzel, K. Setsompop, J. Polimeni, S. Huang; High-fidelity diffusion tensor MRI with six diffusion-weighted images using optimized q-space sampling and deep learning; ISMRM Workshop on MData Sampling & Image Reconstruction, Sedona, AZ, USA, 2020
2019:
J. Cho, H. Park, K. Setsompop, B. Bilgic; Multi-shot Echo-planar Imaging with Simultaneous MultiSlice Wave-Encoding; International Society for Magnetic Resonance in Medicine 27th Scientific Meeting, Montreal, 2019
D. Polak, I. Chatnuntawech, J. Yoon, S.S. Iyer, K. Setsompop, B. Bilgic; VaNDI: Variational Nonlinear Dipole Inversion enables QSM without free parameters; International Society for Magnetic Resonance in Medicine 27th Scientific Meeting, Montreal, 2019
[Matlab code]
B. Bilgic; C. Liao, M.K. Manhard, Q. Tian, I. Chatnuntawech, S.S. Iyer, S.F. Cauley, T. Feiweier, S. Giri, Y. Hu, S. Huang, J. Polimeni, L.L. Wald, K. Setsompop; Robust high-quality multi-shot EPI with low-rank prior and machine learning; International Society for Magnetic Resonance in Medicine 27th Scientific Meeting, Montreal, 2019
[HTML][Matlab code]
X. Cao, C. Liao, S.S. Iyer, H. He, K. Setsompop, J. Zhong, B. Bilgic; T2-gSlider: rapid high resolution T2 mapping with generalized SLIce Dithered Enhanced Resolution and model-based reconstruction; International Society for Magnetic Resonance in Medicine 27th Scientific Meeting, Montreal, 2019
[Matlab code]
M.K. Manhard, C. Liao, J. Stockmann, D. Park, S. Han, J. Polimeni, B. Bilgic, JK. Setsompop; Combined T1, T2, and T2* mapping using a multi-inversion multi-echo spin and gradient echo EPI sequence; International Society for Magnetic Resonance in Medicine 27th Scientific Meeting, Montreal, 2019
R. Jones, G. Grisot, J. Augustinack, D. Boas, B. Fischl, H. Wang, B. Bilgic, A. Yendiki; Validation of DSI compressed sensing reconstruction in ex vivo human brain; International Society for Magnetic Resonance in Medicine 27th Scientific Meeting, Montreal, 2019
J. Marques, B. Bilgic, J. Maineke, C. Milovic, K-S Chan, W. van der Zwaag, R. Hedouin, C. Langkammer, F. Schweser; Towards QSM Challenge 2.0: Creation and Evaluation of a Realistic Magnetic Susceptibility Phantom; International Society for Magnetic Resonance in Medicine 27th Scientific Meeting, Montreal, 2019
Q. Tian, B. Bilgic, Q. Fan, C. Ngamsombat, A. Chaudhari, N. Ohringer, Y. Hu, T. Witzel, K. Setsompop, J. Polimeni, S. Huang; SuperSurfer: Cortical surface reconstruction using super-resolution anatomical MR images synthesized by deep learning; International Society for Magnetic Resonance in Medicine 27th Scientific Meeting, Montreal, 2019
Q. Tian, B. Bilgic, Q. Fan, C. Ngamsombat, C. Liao, Y. Hu, T. Witzel, K. Setsompop, J. Polimeni, S. Huang; Six-direction diffusion tensor MRI using a convolutional neural network; International Society for Magnetic Resonance in Medicine 26th Scientific Meeting, Montreal, 2019
S.S. Iyer, D. Polak, C. Liao, S.F. Cauley, B. Bilgic, K. Setsompop; Rapid, Time-Resolved Brain Imaging with Multiple Clinical Contrasts using Wave-Shuffling; International Society for Magnetic Resonance in Medicine 26th Scientific Meeting, Montreal, 2019
M. Fair, F. Wang, Z. Dong, B. Bilgic, T. Reese, K. Setsompop, L.L. Wald; Propeller Echo-Planar Time-resolved Imaging with Dynamic Encoding (PEPTIDE); International Society for Magnetic Resonance in Medicine 26th Scientific Meeting, Montreal, 2019
M. Haskell, S.F. Cauley, B. Bilgic, J. Hossbach, J. Pfeuffer, K. Setsompop, L.L. Wald; Network Accelerated Motion Estimation and Reduction (NAMER): Accelerating forward model based retrospective motion correction using a convolutional neural network; International Society for Magnetic Resonance in Medicine 26th Scientific Meeting, Montreal, 2019
D. Polak, S.F. Cauley, B. Bilgic, E. Raithel, P. Bachert, E. Adalsteinsson, K. Setsompop; Joint multi-contrast Variational Network reconstruction (jVN) with application to Wave-CAIPI acquisition for rapid imaging; International Society for Magnetic Resonance in Medicine 26th Scientific Meeting, Montreal, 2019
C. Liao, J. Stockmann, Q. Tian, B. Bilgic, M.K. Manhard, L.L. Wald, K. Setsompop; High-fidelity, high-isotropic resolution diffusion imaging through gSlider acquisition with B1+ & T1 corrections and multi-coil B0 shim array; International Society for Magnetic Resonance in Medicine 26th Scientific Meeting, Montreal, 2019
S.F. Cauley, D. Polak, W. Liu, B. Bilgic, B. Gagoski, P.E. Grant, J. Conklin, J. Kirsch, S. Huang, K. Setsompop, L.L. Wald; Geometric Coil Mixing (GCM) to Dampen Confounding Signals in MRI Reconstruction; International Society for Magnetic Resonance in Medicine 26th Scientific Meeting, Montreal, 2019
Q. Tian, C. Ngamsombat, B. Bilgic, Q. Fan, Y. Hu, J. McNab, T. Witzel, K. Setsompop, J. Polimeni, S. Huang; Creating a diffusion tractography-based atlas of human thalamic ventral intermediate nucleus aided by deep learning; International Society for Magnetic Resonance in Medicine 26th Scientific Meeting, Montreal, 2019
F. Wang, Z. Dong, T. Reese, B. Bilgic, M.K. Manhard, J. Chen, J. Polimeni, L.L. Wald, K. Setsompop; Echo Planar Time-Resolved Imaging (EPTI); International Society for Magnetic Resonance in Medicine 26th Scientific Meeting, Montreal, 2019
Z. Dong, F. Wang, T. Reese, B. Bilgic, K. Setsompop; Echo Planar Time-Resolved Imaging (EPTI) with subspace constraint and optimized k-t trajectory; International Society for Magnetic Resonance in Medicine 26th Scientific Meeting, Montreal, 2019
2018:
B. Bilgic, I. Chatnuntawech, S.F. Cauley, M.K. Manhard, L.L. Wald, K. Setsompop; Accelerated Multi-shot EPI through Machine Learning and Joint Reconstruction; ISMRM Workshop on Machine Learning, Pacific Grove, CA, USA, 2018, oral presentation [PDF][Data & Python code for Keras]
J. Yoon, E. Gong, G. Zaharchuk, J. Pauly, B. Bilgic, J. Lee, J. Ko, H. Jung, J. Lee; QSM with deep neural network; ISMRM Workshop on Machine Learning, Pacific Grove, CA, USA, 2018
D. Polak, E. Gong, S.F. Cauley, B. Bilgic, E. Raithel, G. Zaharchuk, J. Pauly, Kawin Setsompop; Faster 3D brain scans using Wave-CAIPI encoding and Deep Learning denoising; ISMRM Workshop on Machine Learning, Pacific Grove, CA, USA, 2018
B. Zhu, B. Bilgic, C. Liao, B.R. Rosen, M.S. Rosen; Deep learning MR reconstruction with Automated Transform by Manifold Approximation (AUTOMAP) in real-world acquisitions with imperfect training: simulation and in-vivo experiments; ISMRM Workshop on Machine Learning, Pacific Grove, CA, USA, 2018
B. Bilgic, S.F. Cauley, L.L. Wald, K. Setsompop; Joint SENSE Reconstruction for Faster Multi-Contrast Wave Encoding; International Society for Magnetic Resonance in Medicine 26th Scientific Meeting, Paris, 2018
[Matlab code] [PDF]
F.F. Yu, S.Y. Huang, T. Duval, J. Cohen-Adad, B. Bilgic; Rapid simultaneous acquisition of QSM and MTV; International Society for Magnetic Resonance in Medicine 26th Scientific Meeting, Paris, 2018
B. Bilgic, S.F. Cauley, I. Chatnuntawech, M.K. Manhard, F. Wang, M. Haskell, C. Liao, L.L. Wald, K. Setsompop; Combining MR-Physics and Machine Learning to Address Intractable Reconstruction Problems; International Society for Magnetic Resonance in Medicine 26th Scientific Meeting, Paris, 2018
[PDF][Data & Python code for Keras]
T.H. Kim, B. Bilgic, C. Liao, M.K. Manhard, L.L. Wald, J.P. Haldar, K. Setsompop; Improving Parallel Imaging by Jointly Reconstructing Multi-Contrast Data; International Society for Magnetic Resonance in Medicine 26th Scientific Meeting, Paris, 2018
C. Milovic, B. Bilgic, B. Zhao, C. Langkammer, J. Acosta-Cabronero, C. Tejos; Nonlinear projection onto dipole fields with preconditioning (nPDF); International Society for Magnetic Resonance in Medicine 26th Scientific Meeting, Paris, 2018
S. Han, C. Liao, M.K. Manhard, B. Bilgic, F. Wang, A.I. Blazejewska, M. van den Boomen, W.A. Grissom, J.R. Polimeni, K. Setsompop; Accelerated spin-echo fMRI using generalized SLIce Dithered Enhanced Resolution Simultaneous MultiSlice (gSlider-SMS) with 'complex-basis' RF-encoding; International Society for Magnetic Resonance in Medicine 26th Scientific Meeting, Paris, 2018
M.K. Manhard, B. Bilgic, C. Liao, S. Han, T. Witzel, Y.F. Yen, K. Setsompop; Accelerated dynamic quantitative perfusion imaging using an optimized simultaneous multi-slice (SMS) spin and gradient echo (SAGE) sequence with joint-virtual coil (JVC) reconstruction; International Society for Magnetic Resonance in Medicine 26th Scientific Meeting, Paris, 2018
A.S. Kanaan, A. Anwander, R. Metere, A. Schafer, T. Schlumm, J. Near, B. Bilgic, K. Muller-Wahl H. Moller; Iron-related gene expression associated with magnetic susceptibility reductions:
Application to the pathophysiology of a movement disorder population; International Society for Magnetic Resonance in Medicine 26th Scientific Meeting, Paris, 2018
F. Wang, Z. Dong, T.G. Reese, B. Bilgic, M.K. Manhard, L.L. Wald, K. Setsompop; Echo Planar Time-resolved Imaging (EPTI); International Society for Magnetic Resonance in Medicine 26th Scientific Meeting, Paris, 2018
F. Wang, B. Bilgic, Z. Dong, M.K. Manhard, N. Ohringer, B. Zhao, M. Haskell, S.F. Cauley, Q. Fan, T. Witzel, E. Adalsteinsson, L.L. Wald, K. Setsompop; Motion-robust sub-millimeter isotropic diffusion imaging through Motion Corrected Generalized Slice Dithered Enhanced Resolution (MC-gSlider) acquisition; International Society for Magnetic Resonance in Medicine 26th Scientific Meeting, Paris, 2018
Y.V. Chang, S.F. Cauley, W. Liu, D. Polak, B.A. Gagoski, B. Bilgic, K. Setsompop, J.R. Polimeni; Quantitative assessment of automatic cortical surface reconstructions from Wave-CAIPI MPRAGE: A validation study; International Society for Magnetic Resonance in Medicine 26th Scientific Meeting, Paris, 2018
E. Gong, B. Bilgic, K. Setsompop, A.P. Fan, G. Zaharchuk, J. Pauly; Accurate and Efficient QSM Reconstruction using Deep Learning; International Society for Magnetic Resonance in Medicine 26th Scientific Meeting, Paris, 2018
C. Liao, M.K. Manhard, B. Bilgic, Q. Fan, H. Wang, S. Han, D.J. Park, F. Wang, J. Zhong, L.L. Wald, K. Setsompop; Joint Virtual Coil Reconstruction with Background Phase Matching for Highly Accelerated Diffusion Echo-Planar Imaging; International Society for Magnetic Resonance in Medicine 26th Scientific Meeting, Paris, 2018
B. Zhu, B. Bilgic, C. Liao, B.R. Rosen, M.S. Rosen; Deep learning MR reconstruction with Automated Transform by Manifold Approximation (AUTOMAP) in real-world acquisitions with imperfect training; International Society for Magnetic Resonance in Medicine 26th Scientific Meeting, Paris, 2018
J. Yoon, J. Ko, J. Lee, H. Jung, B. Bilgic, K. Setsompop, J. Lee; Quantitative Susceptibility Mapping using Deep Neural Network; International Society for Magnetic Resonance in Medicine 26th Scientific Meeting, Paris, 2018
S. Lala, B.A. Gagoski, J.N. Stout, B. Zhao, B. Bilgic, P.E. Grant, P. Golland, E. Adalsteinsson; A Machine Learning Approach for Mitigating Artifacts in Fetal Imaging due to an Undersampled HASTE Sequence; International Society for Magnetic Resonance in Medicine 26th Scientific Meeting, Paris, 2018
C. Milovic, B. Bilgic, B. Zhao, C. Langkammer, C. Tejos, J. Acosta-Cabronero; Weak-harmonic regularization for quantitative susceptibility mapping (WH-QSM); International Society for Magnetic Resonance in Medicine 26th Scientific Meeting, Paris, 2018
D. Polak, S.F. Cauley, S.Y. Huang, M.G. Longo, B. Bilgic, E. Rathiel, L.L. Wald, K. Setsompop; Highly-accelerated volumetric brain protocol using optimized Wave-CAIPI encoding; International Society for Magnetic Resonance in Medicine 26th Scientific Meeting, Paris, 2018
H. Wei, B. Bilgic, K. Setsompop, B. Keil, D. Feinberg, C. Liu; Imaging Human Brain Cortical Substructure with Quantitative Susceptibility Mapping at 7 T; International Society for Magnetic Resonance in Medicine 26th Scientific Meeting, Paris, 2018
Z. Dong, F. Wang, T.G. Reese, M.K. Manhard, B. Bilgic, L.L. Wald, H. Guo, K. Setsompop; Fast Distortion-Free Diffusion Imaging using “tilted-CAIPI” PSF-EPI; International Society for Magnetic Resonance in Medicine 26th Scientific Meeting, Paris, 2018
Z. Dong, F. Wang, T.G. Reese, M.K. Manhard, B. Bilgic, L.L. Wald, H. Guo, K. Setsompop; Tilted-CAIPI for Highly Accelerated Distortion-Free EPI with Point Spread Function (PSF) Encoding; International Society for Magnetic Resonance in Medicine 26th Scientific Meeting, Paris, 2018
Z. Wu, B. Bilgic, H. He, Y. Sun, Y. Du, K. Setsompop, J. Zhong; Zero-padding reconstruction for wave-CAIPI images with improved accuracy, and its application in ViSTa myelin water images; International Society for Magnetic Resonance in Medicine 26th Scientific Meeting, Paris, 2018
S.S. Iyer, B. Bilgic, K. Setsompop; Faster T2 Shuffling with Wave-encoding; International Society for Magnetic Resonance in Medicine 26th Scientific Meeting, Paris, 2018
A. Tamanti, K. Bredies, M. Castellaro, S. Ropele, B. Bilgic, C. Langkammer; Structure tensor enhanced quantitative susceptibility mapping (ST-QSM); International Society for Magnetic Resonance in Medicine 26th Scientific Meeting, Paris, 2018
C. Liao, B. Bilgic, M.K. Manhard, X. Cao, J. Zhong, L.L. Wald, K. Setsompop; Optimized 3D Stack-of-Spirals MR Fingerprinting with Hybrid Sliding-Window and GRAPPA Reconstruction; International Society for Magnetic Resonance in Medicine 26th Scientific Meeting, Paris, 2018
2017:
B. Bilgic, B. Zhao, I. Chatnuntawech, L.L. Wald, K. Setsompop; Calibrationless Parallel Imaging in Multi Echo/Contrast Data; International Society for Magnetic Resonance in Medicine 25th Scientific Meeting, Hawaii, Power Pitch presentation [HTML][Matlab code]
B. Bilgic, T. Witzel, H. Bhat, L.L. Wald, K. Setsompop; Joint Reconstruction of Phase-Cycled Balanced SSFP with Constrained Parallel Imaging; International Society for Magnetic Resonance in Medicine 25th Scientific Meeting, Hawaii, Power Pitch presentation [HTML][Matlab code]
D. Polak, K. Setsompop, S.F. Cauley, B.A. Gagoski, H. Bhat, F. Maier, L.L. Wald, B. Bilgic; Wave-CAIPI for Highly Accelerated MP-RAGE Imaging; International Society for Magnetic Resonance in Medicine 25th Scientific Meeting, Hawaii, Power Pitch presentation Magna Cum Laude Award
B. Zhao, B. Bilgic, J. Stockmann, L.L. Wald, K. Setsompop; A Maximum Likelihood Approach to Simultaneous Multislice Magnetic Resonance Fingerprinting; International Society for Magnetic Resonance in Medicine 25th Scientific Meeting, Hawaii
B.A. Poser, B. Bilgic, B.A. Gagoski, K. Uludag, V.A Stenger, L.L. Wald, K. Setsompop; Echo-planar imaging with wave-CAIPI acquisition and reconstruction; International Society for Magnetic Resonance in Medicine 25th Scientific Meeting, Hawaii
T.H. Kim, B. Bilgic, D. Polak, K. Setsompop, J.P. Haldar; Wave-LORAKS for faster Wave-CAIPI MRI; International Society for Magnetic Resonance in Medicine 25th Scientific Meeting, Hawaii
Z. Wu, B. Bilgic, H. He, Y. Sun, K. Setsompop, J. Zhong; Wave-CAIPI ViSTa: Accelerated mapping for direct visualization of myelin water; International Society for Magnetic Resonance in Medicine 25th Scientific Meeting, Hawaii
G-C Ngo, B. Bilgic, B. Gagoski, B.P. Sutton; Incorporating macroscale susceptibility in QSM reconstruction with 3D spiral acquisition; International Society for Magnetic Resonance in Medicine 25th Scientific Meeting, Hawaii
C. Milovic, B. Bilgic, B. Zhao, J. Acosta-Cabronero, C. Tejos; A Fast Algorithm for Nonlinear QSM Reconstruction; International Society for Magnetic Resonance in Medicine 25th Scientific Meeting, Hawaii
C.S. Aigner, A. Rund, B. Bilgic, B.A. Gagoski, K. Setsompop, K. Kunisch, R. Stollberger; Application of time-optimal simultaneous multi-slice refocusing to TSE/RARE; International Society for Magnetic Resonance in Medicine 25th Scientific Meeting, Hawaii
H. Wang, J.R. Polimeni, B. Bilgic, L.L. Wald, K. Setsompop; Analytical G-factor Calculation for Slice-GRAPPA with Odd-even Kernels (SG-OK); International Society for Magnetic Resonance in Medicine 25th Scientific Meeting, Hawaii
H. Ye, C. Liao, Q. Li, Xiaozhi Cao, B. Zhao, B. Bilgic, K. Setsompop, H. He, H. Liu, J. Zhong; Spiral-out and -in Double Echoes (SOIDE) Magnetic Resonance Fingerprinting with Improved T2 Mapping; International Society for Magnetic Resonance in Medicine 25th Scientific Meeting, Hawaii
A.S. Kanaan, A. Anwander, A. Schäfer, B. Bilgic, T. Schlumm, J. Near, K. Müller-Vahl2, H.E. Möller; QSM meets MRS: The influence of subcortical iron on glutamatergic neurotransmission in a movement disorder population; International Society for Magnetic Resonance in Medicine 25th Scientific Meeting, Hawaii
B. Keil, C. Sappo, B. Bilgic, J.R. Polimeni, L. Golestani, R. Etzel, L.L Wald, D.A. Feinberg, K. Setsompop; Sub-Millimeter Cortical Imaging at 7T using a High-Density Motor-Cortex 32-Channel Array Coil; International Society for Magnetic Resonance in Medicine 25th Scientific Meeting, Hawaii
R. Metere, A.S. Kanaan, B. Bilgic, T. Schlumm, H.E. Möller; Effects of coil combination algorithms on Quantitative Susceptibility Mapping; International Society for Magnetic Resonance in Medicine 25th Scientific Meeting, Hawaii
S.D. Robinson, K. Eckstein, J.P. Marques, B. Bilgic, S. Trattnig, F. Schweser; A comprehensive assessment of methods for combining phase data from array radio-frequency coils at 7T; International Society for Magnetic Resonance in Medicine 25th Scientific Meeting, Hawaii
2016:
B. Bilgic, T. Witzel, H. Bhat, L.L. Wald, K. Setsompop; Joint Reconstruction for Phase-Cycled Balanced SSFP;
ESMRMB 33rd Scientific Meeting,
NYU Innovation to Implementation in Imaging Workshop
[PDF][Matlab code]
B. Bilgic, J.P. Marques, L.L. Wald, K. Setsompop; Block Coil Compression for Virtual Body Coil without Phase Singularities; Fourth International Workshop on MRI Phase Contrast & Quantitative Susceptibility Mapping
[PDF][Matlab code]
B. Bilgic, S.F. Cauley, H. Ye, C. Langkammer, B.A. Poser, K. Setsompop; Accelerated QSM; Fourth International Workshop on MRI Phase Contrast & Quantitative Susceptibility Mapping, invited abstract [PDF]
C. Milovic, B. Bilgic, B. Zhao, J. Acosta-Cabronero, C. Tejos; A Fast Algorithm for Nonlinear QSM Reconstruction with Variational Penalties; Fourth International Workshop on MRI Phase Contrast & Quantitative Susceptibility Mapping
R. Metere, A.S. Kanaan, A. Schäfer, B. Bilgic, T. Schlumm, H.E. Möller; Effects of different coil reconstruction algorithms on QSM results; Fourth International Workshop on MRI Phase Contrast & Quantitative Susceptibility Mapping
J. Kim, S. Bollmann, C. Langkammer, B. Bilgic; GPU-accelerated Quantitative Susceptibility Map Reconstruction with Total Generalized Variation Regularization; Fourth International Workshop on MRI Phase Contrast & Quantitative Susceptibility Mapping
B. Bilgic, H. Ye, L.L. Wald, K. Setsompop; Optimized CS-Wave imaging with tailored sampling and efficient reconstruction; International Society for Magnetic Resonance in Medicine 24th Scientific Meeting, oral presentation [HTML] Summa Cum Laude Award
I. Chatnuntawech, P. McDaniel, S.F. Cauley, B.A. Gagoski, C. Langkammer, A. Martin, P.E. Grant, L.L. Wald, K. Setsompop, E. Adalsteinsson, B. Bilgic; TGV-Regularized Single-Step Quantitative Susceptibility Mapping; International Society for Magnetic Resonance in Medicine 24th Scientific Meeting, oral presentation [HTML][Matlab code]
B. Bilgic, J.R. Polimeni, L.L. Wald, K. Setsompop; Automated tissue phase and QSM estimation from multichannel data; International Society for Magnetic Resonance in Medicine 24th Scientific Meeting, e-poster presentation [HTML][Matlab code]
P. McDaniel, B. Bilgic, A.P. Fan, J. Stout, E. Adalsteinsson; Simultaneous Quantification of Blood Vessel Caliber and Oxygenation via Multi-Voxel Joint Utilization of Magnitude and Phase (MV-JUMP); International Society for Magnetic Resonance in Medicine 24th Scientific Meeting, e-poster presentation
S.F. Cauley, K. Setsompop, B. Bilgic, H. Bhat, B. Gagoski, T. Witzel, L.L. Wald; Joint K-space Trajectory and Parallel Imaging Optimization for Auto-calibrated Image Reconstruction; International Society for Magnetic Resonance in Medicine 24th Scientific Meeting, power pitch presentation
H. Ye, B. Bilgic, S.F. Cauley, B. Gagoski, J. Zhong, Y. Du, L.L. Wald, K. Setsompop; Echo-Shift wave-CAIPI with Simultaneous MultiSlice for rapid susceptibility weighted FLASH imaging; International Society for Magnetic Resonance in Medicine 24th Scientific Meeting, e-poster presentation
2015:
H. Ye, B. Gagoski, B. Bilgic, S.F. Cauley, D. Ma, Y. Du, L.L. Wald, K. Setsompop; Simultaneous Multi-Slice MR Fingerprinting with slice-GRAPPA reconstruction; ISMRM Workshop on Simultaneous Multi-Slice Imaging, 2015
B. Gagoski†, B. Bilgic†, C. Eichner, H. Bhat, P.E. Grant, L.L. Wald, K. Setsompop; RARE/Turbo Spin Echo Imaging with Simultaneous MultiSlice Wave-CAIPI; International Society for Magnetic Resonance in Medicine 23rd Scientific Meeting, oral presentation [PDF][Matlab code] † These authors contributed equally to this work
Summa Cum Laude Award
B. Bilgic, L. Xie, R. Dibb, C. Langkammer, A. Mutluay, H. Ye, J.R. Polimeni, C. Liu, L.L. Wald, K. Setsompop; Rapid Multi-Orientation Susceptibility Mapping with Wave-CAIPI; International Society for Magnetic Resonance in Medicine 23rd Scientific Meeting, oral presentation [PDF][Matlab code] Summa Cum Laude Award
White Matter Study Group student research competition finalist
K. Setsompop, B. Bilgic, A. Nummenmaa, Q. Fan, S.F. Cauley, S. Haung, I. Chatnuntawech, Y. Rathi, T. Witzel, L.L. Wald; 700 μm isotropic diffusion imaging at 3T using SLIDER-SMS with ZOOPPA; International Society for Magnetic Resonance in Medicine 23rd Scientific Meeting
K. Jafari-Khouzani, B. Bilgic, J. Kalpathy-Cramer, K. Setsompop; Fast non-local means reconstruction for multi-contrast compressed sensing; International Society for Magnetic Resonance in Medicine 23rd Scientific Meeting
P. McDaniel, A.P. Fan, B. Bilgic, J. Stout, E. Adalsteinsson; Improved Accuracy in Susceptibility-based OEF Measurements by Mitigation of Partial-Volume Effects via Combined Magnitude and Phase Reconstruction; International Society for Magnetic Resonance in Medicine 23rd Scientific Meeting
S. Cetin, A.P. Fan, B. Bilgic, K. Setsompop, G. Unal; Semi-automated visualization and segmentation of cerebral veins from QSM; International Society for Magnetic Resonance in Medicine 23rd Scientific Meeting
I. Chatnuntawech, B. Bilgic, A. Martin, K. Setsompop, E. Adalsteinsson; A Fast Reconstruction Algorithm for Accelerated Multi-Contrast MRI; International Society for Magnetic Resonance in Medicine 23rd Scientific Meeting
A. Martin, I. Chatnuntawech, B. Bilgic, K. Setsompop, E. Adalsteinsson, E. Schiavi; Total Generalized Variation for Joint Multi-Contrast Parallel Imaging Reconstruction of Undersampled k-space Data; International Society for Magnetic Resonance in Medicine 23rd Scientific Meeting
C. Langkammer, B. Bilgic, C. Louapre, S. Govindarajan, C. Gianni, K. Setsompop, C. Mainero; Wave-CAIPI and TGV-QSM for fast sub-millimeter QSM at 7 Tesla; International Society for Magnetic Resonance in Medicine 23rd Scientific Meeting
H. Ye, B. Gagoski, B. Bilgic, S.F. Cauley, D. Ma, Y. Du, M.A. Griswold, L.L. Wald, K. Setsompop; Simultaneous Multi-Slice Magnetic Resonance Fingerprinting Reconstruction using GROG+GRAPPA (GG); International Society for Magnetic Resonance in Medicine 23rd Scientific Meeting
Y. Jiang, H. Ye, B. Bilgic, D. Ma, T. Witzel, S.F. Cauley, E. Adalsteinsson, K. Setsompop, M.A. Griswold, L.L. Wald; Simultaneous T1 and T2 quantitation of the Human Brain at 7 Tesla by MR Fingerprinting; International Society for Magnetic Resonance in Medicine 23rd Scientific Meeting
2014:
B. Bilgic, C. Langkammer, A. Mutluay, L.L. Wald, K. Setsompop; Rapid Acquisition for Multi-Orientation QSM; Third International Workshop on MRI Phase Contrast & Quantitative Susceptibility Mapping, talk & poster presentation [PDF] Honorable mention for best poster award
B. Bilgic, C. Langkammer, L.L. Wald, K. Setsompop; Single-Step QSM with Fast Reconstruction; Third International Workshop on MRI Phase Contrast & Quantitative Susceptibility Mapping, talk & poster presentation [PDF][Matlab code]
B. Bilgic, B. Gagoski, S.F. Cauley, A.P. Fan, J.R. Polimeni, P.E. Grant, L.L. Wald, K. Setsompop; Wave-CAIPI Enables Highly Accelerated 3D MRI; 40th Annual Northeast Bioengineering Conference, poster presentation [PDF]
B. Bilgic, A.P. Fan K. Setsompop, C. Eichner, S.F. Cauley, J.R. Polimeni, M. Bianciardi, E. Adalsteinsson, L.L. Wald, K. Setsompop; Fast Reconstruction for Regularized Quantitative Susceptibility Mapping; International Society for Magnetic Resonance in Medicine 22nd Scientific Meeting, oral presentation [PDF][Matlab code] Summa Cum Laude Award
B. Bilgic, B. Gagoski, S.F. Cauley, A.P. Fan, J.R. Polimeni, P.E. Grant, L.L. Wald, K. Setsompop; Rapid QSM Acquisition with Wave-CAIPI; International Society for Magnetic Resonance in Medicine 22nd Scientific Meeting, power poster presentation [PDF][Matlab code] Summa Cum Laude Award
I. Chatnuntawech, B. Gagoski, B. Bilgic, S.F. Cauley, P.E. Grant, K. Setsompop, E. Adalsteinsson; Accelerated MRSI Using Randomly Undersampled Spiral-Based K-Space Trajectories; International Society for Magnetic Resonance in Medicine 22nd Scientific Meeting
C. Eichner, B. Bilgic, M. Bianciardi, J.R. Polimeni, R. Turner, J. Schulz, D. Norris, L.L. Wald, K. Setsompop; Acquisition and Processing Pipeline for Multi-Contrast fMRI Multi-Echo SMS (MESMS) GE-EPI at 7T; International Society for Magnetic Resonance in Medicine 22nd Scientific Meeting
M. Bianciardi, J.R. Polimeni, K. Setsompop, C. Eichner, B. Bilgic, L.L. Wald; Evaluation of Dynamic Off-Resonance Correction of Respiratory Instability in MRI Signals for High-Order Spherical Harmonic Basis Set and Multivariate Modeling of Respiratory Sources; International Society for Magnetic Resonance in Medicine 22nd Scientific Meeting
S.F. Cauley, B. Bilgic, J.R. Polimeni, H. Bhat, L.L. Wald, K. Setsompop; A General Hierarchical Mapping Framework (HMF) for Coil Compression; International Society for Magnetic Resonance in Medicine 22nd Scientific Meeting
S.F. Cauley, M. Lustig, B. Bilgic, H. Bhat, L.L. Wald, K. Setsompop; Geometric-Decomposition Coil Compression for Real-Time Simultaneous MultiSlice EPI Reconstruction at High MultiBand Factors; International Society for Magnetic Resonance in Medicine 22nd Scientific Meeting
P. Montesinos, J.R. Polimeni, B. Bilgic, S.F. Cauley, M. Desco, R. Nezafat, L.L. Wald, E. Adalsteinsson, D.E. Sosnovik; High Resolution Inner Volume Imaging of Human Coronary Atherosclerotic Plaque: Impact and Limits of Parallel Acquisition; International Society for Magnetic Resonance in Medicine 22nd Scientific Meeting
2013:
B. Bilgic, I. Chatnuntawech, K. Setsompop, S.F. Cauley, L.L. Wald, E. Adalsteinsson; Fast Regularized Reconstruction Tools for QSM and DSI; ISMRM Workshop on Data Sampling & Image Reconstruction 2013, oral presentation [PDF] [QSM Matlab code][DSI Matlab code]
B. Bilgic, I. Chatnuntawech, K. Setsompop, S.F. Cauley, L.L. Wald, E. Adalsteinsson; Fast DSI Reconstruction with Trained Dictionaries; International Society for Magnetic Resonance in Medicine 21st Scientific Meeting, oral presentation [PDF] c
Magna Cum Laude Award
B. Bilgic, I. Chatnuntawech, A.P. Fan, E. Adalsteinsson; Regularized QSM in Seconds; International Society for Magnetic Resonance in Medicine 21st Scientific Meeting, oral presentation [PDF][Matlab code] Summa Cum Laude Award
S.F. Cauley, Y. Xi, B. Bilgic, K. Setsompop, J. Xia, E. Adalsteinsson, V.R. Balakrishnan, L.L. Wald; Scalable and Accurate Variance Estimation (SAVE) for Joint Bayesian Compressed Sensing; International Society for Magnetic Resonance in Medicine 21st Scientific Meeting
S.F. Cauley, O.A. Abuhashem, I. Chatnuntawech, B. Bilgic, K. Setsompop, L.L. Wald, E. Adalsteinsson; Low-Rank Basis Smoothing for the Denoising of Diffusion Weighted Images; International Society for Magnetic Resonance in Medicine 21st Scientific Meeting
I. Chatnuntawech, B. Bilgic, E. Adalsteinsson; Undersampled Spectroscopic Imaging with Model-based Reconstruction; International Society for Magnetic Resonance in Medicine 21st Scientific Meeting
I. Chatnuntawech, B. Bilgic, B. Gagoski, T. Kok, A.P. Fan, E. Adalsteinsson; Metabolite Map Estimation from Undersampled Spectroscopic Imaging Data using N-Compartment Model; International Society for Magnetic Resonance in Medicine 21st Scientific Meeting
S.Y. Huang, E. Adalsteinsson, B. Bilgic, S. Foong, L.L. Wald; Localized Electrical Property Retrieval - Theories and Numerical Examples; International Society for Magnetic Resonance in Medicine 21st Scientific Meeting
A.P. Fan, B. Bilgic, L. Gagnon, T. Witzel, H. Bhat, B.R. Rosen, E. Adalsteinsson; Quantitative Oxygenation Venogram from MR Phase; International Society for Magnetic Resonance in Medicine 21st Scientific Meeting
2012:
B. Bilgic, E. Adalsteinsson; Joint Bayesian Compressed Sensing with Prior Estimate; International Society for Magnetic Resonance in Medicine 20th Scientific Meeting, oral presentation[PDF][Matlab code]
B. Bilgic, B. Gagoski, E. Adalsteinsson; Lipid Suppression in CSI with Highly-Undersampled Peripheral K-Space and Spatial Priors; International Society for Magnetic Resonance in Medicine 20th Scientific Meeting, e-poster presentation[PDF][Matlab code]
O. A. Abuhashem, B. Bilgic, E. Adalsteinsson; GPU Accelerated Quantitative Susceptibility Mapping; International Society for Magnetic Resonance in Medicine 20th Scientific Meeting
B. Gagoski, B. Bilgic, T. Kok, E. Adalsteinsson; Accelerated Spiral Chemical Shift Imaging with Compressed Sensing; International Society for Magnetic Resonance in Medicine 20th Scientific Meeting
T. Kok, B. Bilgic, B. Gagoski, E. Adalsteinsson; Lipid Artifact Suppression for Detection of Cortical Metabolites in High-Resolution CTPRESS; International Society for Magnetic Resonance in Medicine 20th Scientific Meeting
A. P. Fan, B. Bilgic, K. A. Heberlein, B. R. Rosen, E. Adalsteinsson; Quantification of the Cerebral Metabolic Rate of Oxygen (CMRO2) Across the Cortex Using Phase-Based Regional Oxygen Metabolism (PROM) MRI; International Society for Magnetic Resonance in Medicine 20th Scientific Meeting
K. Setsompop, B. Bilgic, J. Cohen-Adad, M. D. Tisdall, B. Keil, T. Witzel, Y. Rathi, V. J. Wedeen, E. Adalsteinsson, L. L. Wald ; Whole-Brain DSI in 4 Minutes: Sparse Sampling in Q-Space with Simultaneous Multi-Slice Acquisition; International Society for Magnetic Resonance in Medicine 20th Scientific Meeting
2011:
B. Bilgic, V.K. Goyal, E. Adalsteinsson; Joint Bayesian Compressed Sensing for Multi-contrast Reconstruction; International Society for Magnetic Resonance in Medicine 19th Scientific Meeting, oral presentation[PDF][Matlab code]
B. Bilgic, A.P. Fan, E. Adalsteinsson; Quantitative Susceptibility Map Reconstruction with Magnitude Prior; International Society for Magnetic Resonance in Medicine 19th Scientific Meeting, oral presentation[PDF]
T. Kok, B. Bilgic, and E. Adalsteinsson; Multi Task Bayesian Compressed Sensing in Sparse 2D Spectroscopy; International Society for Magnetic Resonance in Medicine 19th Scientific Meeting
P. Fan, B. Bilgic, T. Benner, B. R. Rosen, E. Adalsteinsson; Regularized Quantitative Susceptibility Mapping for Phase-based Regional Oxygen Metabolism (PROM) at 7T; International Society for Magnetic Resonance in Medicine 19th Scientific Meeting
Theses:
B. Bilgic; Reconstruction Algorithms for MRI; Ph.D. thesis, Massachusetts Institute of Technology, Department of Electrical Engineering and Computer Science, February 2013 [PDF]
B. Bilgic; Fast Human Detection with Cascaded Ensembles; S.M. thesis, Massachusetts Institute of Technology, Department of Electrical Engineering and Computer Science, February 2010 [PDF]
Patents:
S.F. Cauley, B. Bilgic, K. Setsompop, L.L. Wald; Systems and Methods For Fast Magnetic Resonance Image Reconstruction Using A Hierarchically Semiseparable Solver; patent pending.
B. Bilgic, K. Setsompop, B.A. Gagoski, L.L. Wald; Rapid Gradient Echo Imaging with Echo-Shifted Wave-CAIPI; patent pending.
B. Bilgic, K. Setsompop, L.L. Wald; Simultaneous Multi-Slice (SMS) Imaging with Random Gradient Blip Scheme; patent pending.
B. Bilgic, K. Setsompop; Fast Quantitative Susceptibility Mapping with L1-Regularization and Automatic Parameter Selection; patent pending.
B. Bilgic, E. Adalsteinsson; Joint Bayesian Compressed Sensing with Applications in MRI; WIPO Patent No. WO/2012/037067, 2012.
